Publications

Comparison of Foundation and Supervised Learning-Based Models for Detection of Referable Glaucoma from Fundus Photographs

Abstract

Purpose To compare the performance of a foundation model and a supervised learning-based model for detecting referable glaucoma from fundus photographs. Design Evaluation of diagnostic technology. Participants 6,116 participants from the Los Angeles County Department of Health Services Teleretinal Screening Program. Methods Fundus photographs were labeled for referable glaucoma (cup-to-disc ratio ≥ 0.6) by certified optometrists. Four deep learning models were trained on cropped and uncropped images (Training N = 8,996; Validation N = 3,002) using two architectures: a vision transformer with self-supervised pretraining on fundus photographs (RETFound) and a convolutional neural network (VGG-19). Models were evaluated on a held-out test set (N = 1,000) labeled by glaucoma specialists and an external test set (N = 300) from University of Southern California clinics. Performance was assessed while varying training set size and stratifying by demographic factors. xRAI was used for saliency mapping. Main Outcome Measures Area under the receiver operating characteristic curve (AUC-ROC) and threshold-specific metrics. Results The cropped image VGG-19 model achieved the highest AUC-ROC (0.924 [0.907-0.940]), which was comparable (p = 0.07) to the cropped image RETFound model (0.911 [0.892-0.930]), which achieved the highest Youden-optimal performance (sensitivity 82.6%, specificity 88.2%) and F1 score (0.801). Cropped image models outperformed their uncropped counterparts within each architecture (p < 0.001 for AUC-ROC comparisons). RETFound models had a performance advantage when …
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Design

Participants

Methods

Main Outcome Measures

Results

Date
January 23, 2026
Authors
Kyle Bolo, Tran Huy Nguyen, Sreenidhi Iyengar, Zhiwei Li, Van Nguyen, Brandon Wong, Jiun Do, Jose-Luis Ambite, Carl Kesselman, Lauren Daskivich, Benjamin Xu
Journal
medRxiv
Pages
2025.08. 21.25334170
Publisher
Cold Spring Harbor Laboratory Press